Variant report

Variant	rs13102168
Chromosome Location	chr4:54170130-54170131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13113985	0.84[AFR][1000 genomes]
rs13130986	0.82[AMR][1000 genomes]
rs62324288	0.84[AFR][1000 genomes]
rs62324326	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7441849	0.84[AFR][1000 genomes]
rs922748	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:54161000-54172000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:54164400-54177400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:54165000-54172000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:54165000-54172200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:54168200-54188000	Weak transcription	Left Ventricle	heart
8	chr4:54169000-54172400	Weak transcription	Primary T cells from cord blood	blood
9	chr4:54169200-54173000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:54169200-54180000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:54169200-54187800	Weak transcription	Liver	Liver
12	chr4:54169400-54172800	Weak transcription	Primary B cells from cord blood	blood
13	chr4:54169400-54178600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:54169400-54187400	Weak transcription	Dnd41	blood
15	chr4:54169600-54173400	Weak transcription	GM12878-XiMat	blood
16	chr4:54169600-54187800	Weak transcription	Brain Angular Gyrus	brain
17	chr4:54169800-54181400	Weak transcription	Fetal Lung	lung
18	chr4:54169800-54181400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:54169800-54187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:54169800-54216200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:54170000-54172400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:54170000-54173000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:54170000-54181400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:54170000-54183800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:54170000-54186800	Weak transcription	HSMM	muscle

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