Variant report

Variant	rs13102364
Chromosome Location	chr4:124939861-124939862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12642448	0.83[ASN][1000 genomes]
rs13112125	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35500317	0.81[ASN][1000 genomes]
rs6842663	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv879879	chr4:124893772-124971109	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3437088	chr4:124939102-124940350	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124935400-124941400	Weak transcription	Aorta	Aorta
2	chr4:124937000-124940000	Enhancers	Stomach Mucosa	stomach
3	chr4:124938400-124940200	Enhancers	NHDF-Ad	bronchial
4	chr4:124939400-124940200	Enhancers	Fetal Heart	heart
5	chr4:124939400-124941600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:124939600-124940400	Enhancers	HepG2	liver
7	chr4:124939600-124941400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:124939600-124941400	Enhancers	HSMMtube	muscle
9	chr4:124939800-124940000	Enhancers	Duodenum Mucosa	Duodenum
10	chr4:124939800-124940200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:124939800-124940200	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr4:124939800-124940200	Enhancers	Esophagus	oesophagus
13	chr4:124939800-124940200	Enhancers	Psoas Muscle	Psoas
14	chr4:124939800-124940200	Enhancers	Thymus	Thymus
15	chr4:124939800-124940200	Flanking Active TSS	Hela-S3	cervix
16	chr4:124939800-124940200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:124939800-124940400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:124939800-124940400	Active TSS	Primary B cells from cord blood	blood
19	chr4:124939800-124940400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:124939800-124940400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:124939800-124940400	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr4:124939800-124940400	Enhancers	Fetal Stomach	stomach
23	chr4:124939800-124940400	Enhancers	Ovary	ovary
24	chr4:124939800-124940400	Enhancers	HUVEC	blood vessel
25	chr4:124939800-124940600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:124939800-124940600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:124939800-124940600	Enhancers	Fetal Thymus	thymus
28	chr4:124939800-124940600	Enhancers	Osteobl	bone
29	chr4:124939800-124940800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:124939800-124940800	Flanking Active TSS	GM12878-XiMat	blood
31	chr4:124939800-124941000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:124939800-124941200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:124939800-124941200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr4:124939800-124941200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:124939800-124941200	Enhancers	Fetal Muscle Leg	muscle
36	chr4:124939800-124941200	Enhancers	Placenta	Placenta
37	chr4:124939800-124941200	Enhancers	Rectal Smooth Muscle	rectum
38	chr4:124939800-124941200	Enhancers	Right Ventricle	heart
39	chr4:124939800-124941400	Enhancers	Left Ventricle	heart
40	chr4:124939800-124941400	Enhancers	NHLF	lung
41	chr4:124939800-124941600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:124939800-124941600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr4:124939800-124941600	Enhancers	Fetal Intestine Small	intestine
44	chr4:124939800-124941600	Enhancers	Fetal Lung	lung
45	chr4:124939800-124941600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr4:124939800-124941600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr4:124939800-124941800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:124939800-124941800	Enhancers	Fetal Intestine Large	intestine
49	chr4:124939800-124941800	Enhancers	Right Atrium	heart
50	chr4:124939800-124941800	Enhancers	Stomach Smooth Muscle	stomach

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