Variant report

Variant	rs13102532
Chromosome Location	chr4:151413637-151413638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151411373..151413789-chr4:151414045..151416361,2	K562	blood:
2	chr4:151411570..151413992-chr4:151416571..151418811,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10003280	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10006620	0.81[ASN][1000 genomes]
rs10006771	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10012751	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11099763	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11099764	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11727950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932768	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12233717	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12643882	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13101664	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13113682	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13123461	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13138244	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1504786	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2174365	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4380503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696352	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4696475	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7659120	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7680593	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13102532	LRBA	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151364600-151414800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:151374400-151419000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:151382400-151422400	Weak transcription	Adipose Nuclei	Adipose
4	chr4:151385400-151442200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:151387600-151419000	Weak transcription	K562	blood
6	chr4:151387800-151423000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:151392200-151414800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:151392200-151424400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:151395200-151416800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:151395400-151424000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:151398600-151415000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:151400000-151434200	Weak transcription	Primary T cells from cord blood	blood
13	chr4:151400400-151422000	Weak transcription	Osteobl	bone
14	chr4:151406200-151416200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:151408400-151413800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr4:151408400-151422200	Weak transcription	Primary B cells from cord blood	blood
17	chr4:151409000-151422000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:151409000-151456600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:151410000-151444400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:151412000-151424200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:151412200-151413800	Weak transcription	Fetal Intestine Large	intestine
22	chr4:151412200-151414000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:151412200-151416600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:151412200-151424200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:151412400-151414800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:151413000-151416200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:151413000-151416800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:151413200-151414200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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