Variant report

Variant	rs13102579
Chromosome Location	chr4:144204009-144204010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs300949	0.84[AMR][1000 genomes]
rs300951	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs300953	0.82[AMR][1000 genomes]
rs476417	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144202600-144204200	Enhancers	Fetal Muscle Trunk	muscle
2	chr4:144203000-144204600	Enhancers	NHDF-Ad	bronchial
3	chr4:144203200-144207200	Weak transcription	Psoas Muscle	Psoas
4	chr4:144203400-144206800	Weak transcription	Fetal Brain Male	brain
5	chr4:144203600-144206200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:144203600-144206800	Weak transcription	NHLF	lung
7	chr4:144203600-144207600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:144203800-144206000	Weak transcription	Fetal Stomach	stomach
9	chr4:144203800-144206200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:144203800-144206400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:144203800-144206600	Weak transcription	Fetal Lung	lung
12	chr4:144203800-144206800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:144203800-144207200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:144203800-144207400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:144204000-144204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:144204000-144207000	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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