Variant report

Variant	rs13103264
Chromosome Location	chr4:96019477-96019478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10516957	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs13103826	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13134042	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13134763	0.94[CEU][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs13134993	0.86[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13143843	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13152580	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1816461	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1836260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1897810	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34355615	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4699408	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7671545	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96009600-96023600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:96014000-96026400	Weak transcription	Aorta	Aorta
3	chr4:96014200-96026400	Weak transcription	Psoas Muscle	Psoas
4	chr4:96014400-96021200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:96015800-96020200	Weak transcription	HUVEC	blood vessel
6	chr4:96016000-96025600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:96016000-96060600	Weak transcription	Thymus	Thymus
8	chr4:96016600-96025400	Weak transcription	Fetal Thymus	thymus
9	chr4:96016600-96054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:96017000-96020000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:96017000-96020200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:96017600-96022200	Weak transcription	A549	lung
13	chr4:96017800-96020000	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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