Variant report

Variant	rs13103510
Chromosome Location	chr14:38885189-38885190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10025536	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11724055	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11730798	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11731568	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13103899	0.84[EUR][1000 genomes]
rs13106925	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13109926	0.83[EUR][1000 genomes]
rs13116789	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13118388	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13120581	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13121569	0.84[EUR][1000 genomes]
rs13124532	0.87[EUR][1000 genomes]
rs13133969	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13136296	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13137511	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140150	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13147817	0.92[EUR][1000 genomes]
rs17292047	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17358524	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358860	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2389868	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389870	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2892870	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2953295	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34601943	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34676199	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35289699	0.85[EUR][1000 genomes]
rs35581370	0.90[EUR][1000 genomes]
rs35850447	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35967840	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35999787	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756155	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3775846	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3775850	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775851	0.85[EUR][1000 genomes]
rs3775856	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4833620	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4834782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834788	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4834789	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4834790	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61747388	0.84[EUR][1000 genomes]
rs62319606	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62319609	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62319612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62319647	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62319657	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62319658	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62321168	0.83[EUR][1000 genomes]
rs6817975	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7676589	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv530640	chr14:38702117-38927901	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754119	chr14:38825349-38988849	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1846932	chr14:38842788-38944821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv510632	chr14:38868313-38939927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv564409	chr14:38870456-38930054	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13103510	LOC645513	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38878800-38889000	Weak transcription	Aorta	Aorta

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