Variant report

Variant	rs13103832
Chromosome Location	chr4:99317274-99317275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99309632..99312263-chr4:99316349..99318716,2	K562	blood:
2	chr4:99314967..99316909-chr4:99316924..99318922,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13103626	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775540	0.97[ASN][1000 genomes]
rs6854095	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99262800-99333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:99264200-99338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:99285000-99337800	Weak transcription	HUVEC	blood vessel
4	chr4:99288400-99342400	Weak transcription	A549	lung
5	chr4:99288800-99319800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:99288800-99329200	Weak transcription	Esophagus	oesophagus
7	chr4:99288800-99332000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:99288800-99333600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:99289000-99318400	Weak transcription	Ovary	ovary
10	chr4:99289000-99333000	Weak transcription	Fetal Intestine Large	intestine
11	chr4:99289000-99333400	Weak transcription	Pancreas	Pancrea
12	chr4:99289000-99333600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:99289400-99321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:99290600-99333600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:99290600-99337800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:99290600-99346000	Weak transcription	Fetal Lung	lung
17	chr4:99294800-99333400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:99296000-99333600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:99298600-99318400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:99299400-99350800	Weak transcription	NHLF	lung
21	chr4:99299600-99338200	Weak transcription	NHDF-Ad	bronchial
22	chr4:99301600-99332000	Weak transcription	Liver	Liver
23	chr4:99301800-99328600	Weak transcription	Fetal Thymus	thymus
24	chr4:99303200-99333400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:99307000-99333600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:99307000-99366200	Weak transcription	Fetal Brain Male	brain
27	chr4:99307200-99333200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:99307200-99333800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:99308200-99321000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:99308600-99363200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:99308800-99318400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:99308800-99333600	Weak transcription	Psoas Muscle	Psoas
33	chr4:99308800-99333600	Weak transcription	NHEK	skin
34	chr4:99308800-99337800	Weak transcription	Osteobl	bone
35	chr4:99309000-99317800	Weak transcription	HMEC	breast
36	chr4:99309000-99318800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:99309000-99328600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:99309400-99318400	Weak transcription	Primary T cells from cord blood	blood
39	chr4:99310200-99333400	Weak transcription	Fetal Stomach	stomach
40	chr4:99312000-99318800	Weak transcription	Fetal Intestine Small	intestine
41	chr4:99312000-99355400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:99312200-99319200	Strong transcription	Dnd41	blood
43	chr4:99312200-99330000	Weak transcription	NH-A	brain
44	chr4:99312200-99333400	Weak transcription	Brain Anterior Caudate	brain
45	chr4:99313000-99317600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:99313000-99317800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:99313000-99317800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:99313000-99331000	Weak transcription	Fetal Kidney	kidney
49	chr4:99313200-99318000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:99313400-99320600	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links