Variant report

Variant	rs13104269
Chromosome Location	chr4:143338705-143338706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143333597..143335971-chr4:143337267..143338808,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1587266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62328295	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143329000-143350000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143330200-143344800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:143334800-143339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:143336000-143341000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:143336200-143340800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:143337000-143339000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:143337000-143339400	Enhancers	HMEC	breast
8	chr4:143337400-143339000	Enhancers	Dnd41	blood
9	chr4:143337400-143339200	Enhancers	NHEK	skin
10	chr4:143338000-143341200	Enhancers	Fetal Heart	heart
11	chr4:143338200-143339200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:143338400-143338800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:143338400-143338800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:143338400-143339000	Enhancers	Primary T cells from cord blood	blood
15	chr4:143338400-143339000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr4:143338400-143339000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:143338400-143339000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:143338400-143339000	Enhancers	Left Ventricle	heart
19	chr4:143338400-143339200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:143338400-143340800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:143338400-143341000	Weak transcription	HSMM	muscle
22	chr4:143338600-143339000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr4:143338600-143339000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:143338600-143339000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:143338600-143340400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:143338600-143341000	Weak transcription	HUVEC	blood vessel
27	chr4:143338600-143342000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr4:143338600-143344800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:143338600-143348800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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