Variant report

Variant	rs13104303
Chromosome Location	chr4:88362904-88362905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88311663..88314102-chr4:88359641..88363442,4	K562	blood:

Variant related genes	Relation type
ENSG00000198189	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13113575	0.81[MEX][hapmap]
rs13115687	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13119333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13130945	0.80[CEU][hapmap]
rs28372775	0.81[MEX][hapmap]
rs28624955	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4314250	0.81[MEX][hapmap]
rs4324526	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6854710	0.81[MEX][hapmap]
rs9994244	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88363000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
5	chr4:88345400-88363400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:88345400-88372400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:88345400-88378800	Weak transcription	A549	lung
8	chr4:88345800-88363400	Weak transcription	Right Ventricle	heart
9	chr4:88345800-88372200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:88346000-88363200	Weak transcription	Primary B cells from cord blood	blood
11	chr4:88346000-88364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:88346200-88363200	Weak transcription	K562	blood
13	chr4:88346200-88370600	Weak transcription	Thymus	Thymus
14	chr4:88346200-88382600	Weak transcription	NHLF	lung
15	chr4:88346400-88366200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:88346400-88369600	Weak transcription	Right Atrium	heart
17	chr4:88346400-88372200	Weak transcription	Aorta	Aorta
18	chr4:88346400-88379400	Weak transcription	Small Intestine	intestine
19	chr4:88346600-88363800	Weak transcription	HMEC	breast
20	chr4:88346600-88371600	Weak transcription	Spleen	Spleen
21	chr4:88346600-88372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
23	chr4:88346800-88371400	Weak transcription	Lung	lung
24	chr4:88347200-88366000	Weak transcription	NH-A	brain
25	chr4:88347200-88372000	Weak transcription	NHEK	skin
26	chr4:88349000-88372400	Weak transcription	HSMMtube	muscle
27	chr4:88349000-88375400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:88349400-88381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:88350600-88380600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:88351200-88379000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:88351400-88382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
33	chr4:88351800-88366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr4:88352600-88363000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:88353000-88363800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:88353400-88377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:88354800-88381600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:88356000-88377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:88356200-88365200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:88356200-88367400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:88356200-88367600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:88356200-88368000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr4:88356400-88363000	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:88356400-88376400	Strong transcription	Liver	Liver
46	chr4:88356400-88377200	Weak transcription	Fetal Brain Male	brain
47	chr4:88356600-88382000	Weak transcription	Brain Germinal Matrix	brain
48	chr4:88357000-88366800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:88357000-88367400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr4:88357200-88366800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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