Variant report

Variant	rs13106276
Chromosome Location	chr4:119046172-119046173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119038066..119040119-chr4:119044894..119047706,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11098423	0.82[ASN][1000 genomes]
rs11098426	0.85[ASN][1000 genomes]
rs12501122	0.99[ASN][1000 genomes]
rs12504529	0.93[ASN][1000 genomes]
rs12506091	0.97[ASN][1000 genomes]
rs12641173	0.97[ASN][1000 genomes]
rs12642204	0.94[ASN][1000 genomes]
rs13119835	0.94[ASN][1000 genomes]
rs13123722	0.97[ASN][1000 genomes]
rs13149888	0.95[ASN][1000 genomes]
rs17593919	0.93[ASN][1000 genomes]
rs17692850	0.92[ASN][1000 genomes]
rs1916686	0.88[ASN][1000 genomes]
rs34165051	0.94[ASN][1000 genomes]
rs34548920	0.93[ASN][1000 genomes]
rs34826732	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35235550	0.97[ASN][1000 genomes]
rs35433749	0.99[ASN][1000 genomes]
rs35760279	0.93[ASN][1000 genomes]
rs4240315	0.92[ASN][1000 genomes]
rs4240319	0.97[ASN][1000 genomes]
rs4240320	0.93[ASN][1000 genomes]
rs4318721	0.97[ASN][1000 genomes]
rs4428355	0.92[ASN][1000 genomes]
rs4544776	0.97[ASN][1000 genomes]
rs4833564	0.97[ASN][1000 genomes]
rs4833565	0.92[ASN][1000 genomes]
rs4834667	0.94[ASN][1000 genomes]
rs4834668	0.93[ASN][1000 genomes]
rs611531	0.87[ASN][1000 genomes]
rs631623	0.87[ASN][1000 genomes]
rs6534084	0.97[ASN][1000 genomes]
rs6820367	0.91[ASN][1000 genomes]
rs6820851	0.85[ASN][1000 genomes]
rs7661325	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13106276	SNHG8,SNORA24	cis	intralobular white matter	BrainEAC
rs13106276	SNHG8,SNORA24	cis	brain	BrainEAC

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119040600-119047000	Strong transcription	Dnd41	blood
2	chr4:119041600-119053000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:119046000-119046200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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