Variant report

Variant	rs131068
Chromosome Location	chr22:33045395-33045396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33040520..33042023-chr22:33043962..33046745,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2051568	1.00[JPT][hapmap]
rs2710358	1.00[JPT][hapmap]
rs2858224	1.00[JPT][hapmap]
rs5994593	1.00[JPT][hapmap]
rs6518780	1.00[CHB][hapmap]
rs8136076	1.00[CHB][hapmap]
rs8136355	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1061824	chr22:33013014-33101138	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv459875	chr22:33025180-33097662	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv588896	chr22:33025180-33097662	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33040800-33053400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:33040800-33054400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33041800-33050000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr22:33044400-33047400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr22:33044600-33046200	Enhancers	Primary hematopoietic stem cells	blood
6	chr22:33044600-33047400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr22:33044600-33047600	Enhancers	HSMMtube	muscle
8	chr22:33044800-33046600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr22:33044800-33046600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr22:33044800-33046800	Enhancers	Osteobl	bone
11	chr22:33044800-33047200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr22:33044800-33047200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr22:33044800-33047200	Enhancers	HSMM	muscle
14	chr22:33044800-33047800	Enhancers	K562	blood
15	chr22:33045000-33045800	Enhancers	Fetal Lung	lung
16	chr22:33045000-33046600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr22:33045000-33046600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr22:33045000-33047000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr22:33045000-33047000	Enhancers	NHDF-Ad	bronchial
20	chr22:33045000-33047400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:33045000-33047600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr22:33045200-33045800	Enhancers	Fetal Muscle Leg	muscle
23	chr22:33045200-33045800	Enhancers	NH-A	brain
24	chr22:33045200-33046000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr22:33045200-33046000	Enhancers	Fetal Stomach	stomach
26	chr22:33045200-33047200	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links