Variant report

Variant	rs13107090
Chromosome Location	chr4:26253529-26253530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13145175	1.00[AFR][1000 genomes]
rs71610890	1.00[AFR][1000 genomes]
rs71610891	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26250000-26254000	Weak transcription	NHDF-Ad	bronchial
2	chr4:26250800-26254000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:26251000-26255400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:26251200-26255600	Weak transcription	Fetal Brain Male	brain
5	chr4:26251400-26254000	Weak transcription	Fetal Stomach	stomach
6	chr4:26251600-26254000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:26253000-26254600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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