Variant report

Variant	rs13109690
Chromosome Location	chr4:124813849-124813850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10034152	0.82[EUR][1000 genomes]
rs1116266	0.89[ASN][1000 genomes]
rs11732946	0.82[EUR][1000 genomes]
rs12639622	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12648267	0.88[EUR][1000 genomes]
rs13101469	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13116100	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519242	0.82[EUR][1000 genomes]
rs17492375	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2082502	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3097937	0.89[ASN][1000 genomes]
rs3097939	0.82[ASN][1000 genomes]
rs34759155	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34845433	0.88[EUR][1000 genomes]
rs35988830	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57389113	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62321841	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62321845	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62321850	0.88[EUR][1000 genomes]
rs6845345	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs986345	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv432623	chr4:124780908-124851395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124810600-124814800	Enhancers	NHDF-Ad	bronchial
2	chr4:124810800-124814400	Weak transcription	Left Ventricle	heart
3	chr4:124811000-124814200	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:124811000-124814600	Weak transcription	Placenta	Placenta
5	chr4:124812000-124814200	Enhancers	Fetal Lung	lung
6	chr4:124812000-124815200	Enhancers	Fetal Intestine Large	intestine
7	chr4:124812200-124816800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:124812400-124815000	Enhancers	Fetal Intestine Small	intestine
9	chr4:124812800-124814000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:124812800-124814800	Enhancers	Colon Smooth Muscle	Colon
11	chr4:124812800-124815400	Enhancers	Fetal Kidney	kidney
12	chr4:124813000-124815000	Enhancers	Fetal Stomach	stomach
13	chr4:124813000-124815600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:124813200-124814000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:124813200-124814600	Enhancers	Fetal Heart	heart
16	chr4:124813400-124814400	Enhancers	Adipose Nuclei	Adipose
17	chr4:124813400-124814400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr4:124813600-124814200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:124813600-124814400	Enhancers	HepG2	liver
20	chr4:124813600-124814800	Enhancers	Psoas Muscle	Psoas
21	chr4:124813600-124815000	Enhancers	NHLF	lung
22	chr4:124813600-124815800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr4:124813800-124814800	Enhancers	Aorta	Aorta
24	chr4:124813800-124814800	Enhancers	Ovary	ovary
25	chr4:124813800-124815000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:124813800-124815000	Enhancers	HSMMtube	muscle
27	chr4:124813800-124815000	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links