Variant report

Variant	rs13110675
Chromosome Location	chr4:74019457-74019458
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74018332..74023301-chr4:74122420..74126136,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250220	Chromatin interaction
ENSG00000132466	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2306059	1.00[CHD][hapmap]
rs35591466	1.00[CHD][hapmap]
rs35631423	1.00[CHD][hapmap]
rs4574377	1.00[CHD][hapmap]
rs7694865	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1013174	chr4:73785324-74031884	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv537137	chr4:73785324-74031884	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1014088	chr4:73817769-74031884	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv537138	chr4:73817769-74031884	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv533502	chr4:73819067-74044813	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	esv1849323	chr4:73926670-74115116	Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73940400-74043400	Strong transcription	Fetal Thymus	thymus
2	chr4:73952800-74023000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:73955800-74022400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr4:73969200-74030200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:73969600-74020000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:73970800-74040800	Weak transcription	Stomach Mucosa	stomach
7	chr4:73971200-74020000	Strong transcription	Dnd41	blood
8	chr4:73971800-74022600	Strong transcription	Liver	Liver
9	chr4:73971800-74032200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:73978800-74029400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:73984600-74022400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:73985000-74031200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:73994800-74029400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:73996200-74025000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:73996400-74020000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:73996400-74023000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr4:73996600-74020200	Strong transcription	Duodenum Mucosa	Duodenum
18	chr4:73996600-74023000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:73996600-74025000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:73997000-74023200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:73999200-74022400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:73999400-74022600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:74004000-74019800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:74004200-74021800	Strong transcription	HMEC	breast
25	chr4:74004400-74019800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr4:74004600-74022400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr4:74004600-74022600	Strong transcription	Fetal Intestine Large	intestine
28	chr4:74004800-74019800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:74004800-74031600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:74005000-74019800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:74005200-74020000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:74005600-74034400	Weak transcription	Esophagus	oesophagus
33	chr4:74005800-74035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:74006000-74024800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr4:74006200-74029200	Strong transcription	HSMM	muscle
36	chr4:74006200-74031200	Weak transcription	Brain Angular Gyrus	brain
37	chr4:74006800-74021800	Weak transcription	Brain Substantia Nigra	brain
38	chr4:74006800-74022400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:74006800-74024000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:74006800-74031400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:74006800-74031600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:74006800-74034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr4:74006800-74043400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:74007000-74028400	Weak transcription	Right Ventricle	heart
45	chr4:74008000-74039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr4:74008600-74025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:74008600-74026800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr4:74008600-74028000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr4:74008600-74034800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr4:74008800-74059600	Weak transcription	Fetal Brain Male	brain

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