Variant report

Variant	rs13110699
Chromosome Location	chr4:89815695-89815696
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1246629	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1246631	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1246632	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1246634	0.81[AMR][1000 genomes]
rs1563689	0.82[AMR][1000 genomes]
rs1585258	0.81[EUR][1000 genomes]
rs2446300	0.83[AMR][1000 genomes]
rs2446301	0.82[AMR][1000 genomes]
rs2446303	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2446304	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2464520	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2464528	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2609259	0.83[AMR][1000 genomes]
rs2609260	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2609261	0.82[AMR][1000 genomes]
rs2609262	0.82[AMR][1000 genomes]
rs2609264	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2609265	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2609282	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2704581	0.81[ASN][1000 genomes]
rs2704582	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2704583	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6813090	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv879532	chr4:89811195-89917135	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89802200-89820600	Weak transcription	Aorta	Aorta
2	chr4:89802600-89825600	Weak transcription	Ovary	ovary
3	chr4:89805400-89817600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:89809200-89828800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:89813400-89821400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:89815000-89816000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:89815200-89815800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:89815200-89815800	Weak transcription	Placenta	Placenta
9	chr4:89815600-89818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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