Variant report

Variant	rs13110726
Chromosome Location	chr4:30539906-30539907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10032181	0.82[ASN][1000 genomes]
rs13127129	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1512147	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2175558	0.85[EUR][1000 genomes]
rs2175559	0.80[EUR][1000 genomes]
rs2221857	0.81[EUR][1000 genomes]
rs2221858	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3914213	0.82[ASN][1000 genomes]
rs6822597	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30536800-30540000	Enhancers	HUVEC	blood vessel
2	chr4:30539000-30540600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:30539200-30540600	Weak transcription	HSMM	muscle
4	chr4:30539800-30541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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