Variant report

Variant	rs13112607
Chromosome Location	chr4:30770684-30770685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs13140818	0.82[CEU][hapmap]
rs13150677	1.00[CEU][hapmap]
rs13152102	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36061926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36077546	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61794756	1.00[AFR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30759200-30770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30763000-30770800	Weak transcription	Aorta	Aorta
4	chr4:30764200-30773000	Enhancers	HUVEC	blood vessel
5	chr4:30766000-30771000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:30766000-30778000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:30766200-30770800	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:30767200-30770800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:30767400-30770800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:30769000-30771400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:30769200-30770800	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:30769200-30771200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:30769200-30771600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:30769200-30773000	Enhancers	Fetal Heart	heart
15	chr4:30769400-30771400	Weak transcription	HMEC	breast
16	chr4:30769400-30773200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:30769600-30770800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:30769600-30771800	Enhancers	NHEK	skin
19	chr4:30769600-30773000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:30769800-30770800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:30769800-30770800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:30769800-30771200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:30769800-30772600	Enhancers	Fetal Kidney	kidney
24	chr4:30769800-30772800	Enhancers	Colon Smooth Muscle	Colon
25	chr4:30770000-30771600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:30770000-30771600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:30770000-30772600	Enhancers	Fetal Stomach	stomach
28	chr4:30770000-30773000	Enhancers	Fetal Lung	lung
29	chr4:30770000-30773600	Enhancers	Hela-S3	cervix
30	chr4:30770200-30771800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr4:30770200-30779200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:30770400-30771000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr4:30770400-30774200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:30770600-30771000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:30770600-30772800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links