Variant report

Variant	rs13113556
Chromosome Location	chr4:79334845-79334846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10000275	0.81[EUR][1000 genomes]
rs10008117	0.91[EUR][1000 genomes]
rs10016220	0.91[EUR][1000 genomes]
rs10018431	0.91[EUR][1000 genomes]
rs10030962	0.91[EUR][1000 genomes]
rs10155231	0.91[EUR][1000 genomes]
rs10155302	0.92[EUR][1000 genomes]
rs10155362	0.91[EUR][1000 genomes]
rs11098162	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11721347	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11721437	0.91[EUR][1000 genomes]
rs12641549	0.91[EUR][1000 genomes]
rs12643552	0.91[EUR][1000 genomes]
rs12647449	0.91[EUR][1000 genomes]
rs12650818	0.91[EUR][1000 genomes]
rs13114483	0.91[EUR][1000 genomes]
rs13123710	0.93[AMR][1000 genomes]
rs13124048	0.93[AMR][1000 genomes]
rs13131912	0.91[EUR][1000 genomes]
rs1484346	0.91[EUR][1000 genomes]
rs1484347	0.91[EUR][1000 genomes]
rs1484348	0.91[EUR][1000 genomes]
rs17003164	0.87[AMR][1000 genomes]
rs28645909	0.91[EUR][1000 genomes]
rs28654799	0.91[EUR][1000 genomes]
rs28685810	0.91[EUR][1000 genomes]
rs28756791	0.91[EUR][1000 genomes]
rs28826318	0.91[EUR][1000 genomes]
rs28861485	0.91[EUR][1000 genomes]
rs28868898	0.91[EUR][1000 genomes]
rs28871899	0.92[EUR][1000 genomes]
rs28891759	0.91[EUR][1000 genomes]
rs34141392	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34204048	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34568699	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35050841	0.91[EUR][1000 genomes]
rs35514354	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35610069	0.92[EUR][1000 genomes]
rs36084946	0.87[AMR][1000 genomes]
rs58220389	0.91[EUR][1000 genomes]
rs62309887	0.93[AMR][1000 genomes]
rs62309936	0.91[EUR][1000 genomes]
rs71611019	0.95[EUR][1000 genomes]
rs7656232	0.91[EUR][1000 genomes]
rs7693638	0.81[EUR][1000 genomes]
rs7697470	0.91[EUR][1000 genomes]
rs7698873	0.91[EUR][1000 genomes]
rs9307386	0.92[EUR][1000 genomes]
rs9991478	0.91[EUR][1000 genomes]
rs9997865	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79284600-79353600	Weak transcription	Left Ventricle	heart
2	chr4:79295600-79338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79302400-79353800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:79318800-79353600	Weak transcription	Pancreas	Pancrea
5	chr4:79319000-79336000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:79320000-79400200	Weak transcription	Psoas Muscle	Psoas
7	chr4:79321800-79337800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:79323200-79337600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:79323200-79340400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:79327000-79342600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:79327400-79343600	Weak transcription	Esophagus	oesophagus
12	chr4:79329000-79362000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:79331000-79335800	Weak transcription	HSMMtube	muscle
14	chr4:79331400-79339000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:79331400-79347600	Weak transcription	Stomach Mucosa	stomach
16	chr4:79332000-79337800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:79332000-79337800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:79332200-79353800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:79332600-79362000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:79333200-79338600	Weak transcription	Placenta	Placenta
21	chr4:79333200-79391000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:79333400-79336400	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr4:79333400-79346600	Strong transcription	HepG2	liver
24	chr4:79333800-79336000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:79333800-79337400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:79334000-79336200	Strong transcription	Fetal Intestine Small	intestine
27	chr4:79334000-79337000	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr4:79334000-79337600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:79334000-79337800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr4:79334000-79347200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:79334200-79335600	Enhancers	Fetal Stomach	stomach
32	chr4:79334200-79336800	Strong transcription	Fetal Intestine Large	intestine
33	chr4:79334200-79337600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:79334200-79337800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:79334200-79338000	Weak transcription	Brain Angular Gyrus	brain
36	chr4:79334400-79342800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:79334600-79335600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:79334600-79335600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr4:79334800-79335000	ZNF genes & repeats	Fetal Brain Male	brain
40	chr4:79334800-79335000	Genic enhancers	Fetal Kidney	kidney
41	chr4:79334800-79335000	Flanking Active TSS	Fetal Lung	lung
42	chr4:79334800-79335200	Enhancers	Primary hematopoietic stem cells	blood
43	chr4:79334800-79335200	Enhancers	Lung	lung
44	chr4:79334800-79335400	Enhancers	Stomach Smooth Muscle	stomach
45	chr4:79334800-79335600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr4:79334800-79335600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:79334800-79335600	Genic enhancers	Fetal Heart	heart
48	chr4:79334800-79335600	Enhancers	Fetal Muscle Leg	muscle

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