Variant report

Variant	rs13114689
Chromosome Location	chr4:186739383-186739384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1021218	1.00[ASN][1000 genomes]
rs13122307	1.00[ASN][1000 genomes]
rs28630747	1.00[ASN][1000 genomes]
rs35656124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831546	1.00[ASN][1000 genomes]
rs6831871	1.00[ASN][1000 genomes]
rs72709760	1.00[ASN][1000 genomes]
rs72709781	1.00[ASN][1000 genomes]
rs72718139	1.00[ASN][1000 genomes]
rs72718142	1.00[ASN][1000 genomes]
rs7660420	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186733200-186741200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:186733400-186740800	Weak transcription	Gastric	stomach
3	chr4:186733600-186741200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:186733600-186743800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:186733800-186740800	Weak transcription	Brain Germinal Matrix	brain
6	chr4:186733800-186741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:186738200-186748000	Weak transcription	Fetal Lung	lung
8	chr4:186738800-186740400	Weak transcription	Pancreas	Pancrea
9	chr4:186738800-186741200	Weak transcription	Fetal Stomach	stomach
10	chr4:186738800-186741200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:186738800-186741400	Weak transcription	Ovary	ovary
12	chr4:186739000-186739400	Enhancers	Stomach Mucosa	stomach
13	chr4:186739000-186741200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:186739000-186741600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:186739000-186741600	Weak transcription	Right Atrium	heart
16	chr4:186739200-186740400	Weak transcription	Fetal Heart	heart
17	chr4:186739200-186741600	Weak transcription	Liver	Liver
18	chr4:186739200-186741800	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links