Variant report

Variant	rs13115416
Chromosome Location	chr6:70142443-70142444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1032819	0.87[ASN][1000 genomes]
rs1032820	0.82[ASN][1000 genomes]
rs10518505	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518506	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518507	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10857118	0.87[ASN][1000 genomes]
rs11098890	0.87[ASN][1000 genomes]
rs1167189	0.90[ASN][1000 genomes]
rs11722194	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11724202	0.83[ASN][1000 genomes]
rs11730606	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12499781	0.87[ASN][1000 genomes]
rs12500556	0.87[ASN][1000 genomes]
rs12506431	0.87[ASN][1000 genomes]
rs12510029	0.87[ASN][1000 genomes]
rs12512290	0.87[ASN][1000 genomes]
rs12642024	0.83[ASN][1000 genomes]
rs13101665	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13104073	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13105260	0.81[ASN][1000 genomes]
rs13111812	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13112009	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13120233	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13120674	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13121471	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13123489	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13129376	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13134285	0.86[ASN][1000 genomes]
rs13134708	0.80[ASN][1000 genomes]
rs13138589	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13145472	0.83[ASN][1000 genomes]
rs13147181	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13147327	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13147530	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13147729	0.80[ASN][1000 genomes]
rs13150274	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13150362	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1388240	0.92[ASN][1000 genomes]
rs1503616	0.87[ASN][1000 genomes]
rs1503618	0.83[ASN][1000 genomes]
rs1503619	0.83[ASN][1000 genomes]
rs1503628	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1604723	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16997928	0.86[ASN][1000 genomes]
rs17011502	0.87[ASN][1000 genomes]
rs17011512	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17011514	0.92[ASN][1000 genomes]
rs17011515	0.92[ASN][1000 genomes]
rs17011593	0.87[ASN][1000 genomes]
rs1847345	0.82[ASN][1000 genomes]
rs1955280	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995473	0.87[ASN][1000 genomes]
rs2391093	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391101	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34078351	0.87[ASN][1000 genomes]
rs35119048	0.83[ASN][1000 genomes]
rs35815056	0.87[ASN][1000 genomes]
rs4295276	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4373174	0.87[ASN][1000 genomes]
rs4413416	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4833353	0.92[ASN][1000 genomes]
rs4833354	0.92[ASN][1000 genomes]
rs4834141	0.81[EUR][1000 genomes]
rs57858535	0.83[ASN][1000 genomes]
rs57921410	0.84[ASN][1000 genomes]
rs57945585	0.84[ASN][1000 genomes]
rs59049129	0.84[ASN][1000 genomes]
rs60076307	0.82[ASN][1000 genomes]
rs60860289	0.82[ASN][1000 genomes]
rs62322170	0.83[ASN][1000 genomes]
rs62322171	0.83[ASN][1000 genomes]
rs62322173	0.84[ASN][1000 genomes]
rs62324214	0.87[ASN][1000 genomes]
rs62324216	0.85[ASN][1000 genomes]
rs62324219	0.85[ASN][1000 genomes]
rs62324227	0.87[ASN][1000 genomes]
rs62324228	0.87[ASN][1000 genomes]
rs62324229	0.87[ASN][1000 genomes]
rs62324230	0.87[ASN][1000 genomes]
rs6534582	0.83[ASN][1000 genomes]
rs6811594	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6839577	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6857787	0.82[ASN][1000 genomes]
rs72674477	0.85[ASN][1000 genomes]
rs72674480	0.87[ASN][1000 genomes]
rs7660971	0.87[ASN][1000 genomes]
rs7661738	0.83[ASN][1000 genomes]
rs7664355	0.85[ASN][1000 genomes]
rs7688921	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3393139	chr6:70141531-70143979	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70142200-70143200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:70142200-70143400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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