Variant report

Variant	rs13115617
Chromosome Location	chr4:6734427-6734428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6729723..6740388-chr4:6746547..6753660,17	MCF-7	breast:
2	chr4:6733013..6734669-chr4:6852771..6855684,2	K562	blood:
3	chr4:6730159..6736629-chr4:6776845..6786036,15	K562	blood:
4	chr4:6732330..6734453-chr4:6871904..6873852,2	MCF-7	breast:
5	chr4:6677558..6680457-chr4:6733316..6736975,3	K562	blood:
6	chr4:6732764..6735164-chr4:6987272..6988894,2	K562	blood:
7	chr4:6732855..6734515-chr4:6762970..6765514,2	MCF-7	breast:
8	chr4:6732202..6734861-chr4:6943923..6945837,2	K562	blood:
9	chr4:6694493..6696442-chr4:6732503..6735491,2	MCF-7	breast:
10	chr4:6731731..6736980-chr4:6749085..6753228,5	K562	blood:
11	chr4:6732054..6736073-chr4:6740558..6746668,6	K562	blood:
12	chr4:6674144..6676548-chr4:6733034..6735030,2	K562	blood:
13	chr4:6732953..6735830-chr4:6909989..6912744,3	MCF-7	breast:
14	chr4:6733568..6735715-chr4:6827902..6831100,3	MCF-7	breast:
15	chr4:6730074..6734441-chr4:7067850..7071627,4	K562	blood:
16	chr4:6698382..6700262-chr4:6733381..6735392,2	MCF-7	breast:
17	chr4:6691034..6692710-chr4:6733317..6735354,2	MCF-7	breast:
18	chr4:6674056..6677028-chr4:6731411..6735030,5	K562	blood:
19	chr4:6714919..6722292-chr4:6728659..6736346,12	MCF-7	breast:
20	chr4:6733037..6734971-chr4:6777500..6779867,2	MCF-7	breast:
21	chr4:6733866..6736797-chr4:6749449..6754631,6	MCF-7	breast:
22	chr4:6731110..6735398-chr4:6782786..6786054,7	K562	blood:
23	chr4:6729213..6736884-chr4:6781393..6786380,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163993	Chromatin interaction
ENSG00000186222	Chromatin interaction
ENSG00000246526	Chromatin interaction
ENSG00000109519	Chromatin interaction
ENSG00000132405	Chromatin interaction
ENSG00000170871	Chromatin interaction
ENSG00000251580	Chromatin interaction
ENSG00000170846	Chromatin interaction

rs_ID	r²[population]
rs4689560	1.00[CHB][hapmap]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6727400-6748000	Weak transcription	Spleen	Spleen
2	chr4:6729600-6735200	Enhancers	Brain Substantia Nigra	brain
3	chr4:6729600-6737000	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:6729800-6734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:6730200-6734600	Weak transcription	Fetal Thymus	thymus
6	chr4:6732000-6735200	Enhancers	Brain Hippocampus Middle	brain
7	chr4:6732200-6735400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr4:6732800-6735800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:6733000-6735200	Enhancers	Lung	lung
10	chr4:6733000-6736000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:6733400-6735200	Enhancers	Esophagus	oesophagus
12	chr4:6733400-6736000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:6733600-6735400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:6733800-6734600	Enhancers	A549	lung
15	chr4:6734000-6735000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:6734000-6735000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:6734000-6735000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:6734000-6735200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:6734000-6735200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:6734000-6735200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:6734000-6735200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:6734000-6735200	Enhancers	Brain Anterior Caudate	brain
23	chr4:6734000-6735200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr4:6734000-6735200	Enhancers	Osteobl	bone
25	chr4:6734000-6736200	Enhancers	Stomach Mucosa	stomach
26	chr4:6734200-6734800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr4:6734200-6734800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:6734200-6734800	Enhancers	Liver	Liver
29	chr4:6734200-6734800	Enhancers	Duodenum Mucosa	Duodenum
30	chr4:6734200-6734800	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr4:6734200-6734800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr4:6734200-6735000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:6734200-6735000	Enhancers	Adipose Nuclei	Adipose
34	chr4:6734200-6735000	Enhancers	Colonic Mucosa	Colon
35	chr4:6734200-6735000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr4:6734200-6735000	Enhancers	Right Atrium	heart
37	chr4:6734200-6735000	Enhancers	Right Ventricle	heart
38	chr4:6734200-6735000	Flanking Active TSS	Hela-S3	cervix
39	chr4:6734200-6735000	Enhancers	NH-A	brain
40	chr4:6734200-6735000	Enhancers	NHDF-Ad	bronchial
41	chr4:6734200-6735000	Enhancers	NHLF	lung
42	chr4:6734200-6735200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr4:6734200-6735200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:6734200-6735200	Enhancers	Brain Angular Gyrus	brain
45	chr4:6734200-6735200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr4:6734200-6735200	Enhancers	HSMM	muscle
47	chr4:6734200-6735200	Enhancers	HSMMtube	muscle
48	chr4:6734200-6735200	Flanking Active TSS	K562	blood
49	chr4:6734200-6735400	Enhancers	HMEC	breast
50	chr4:6734200-6736200	Enhancers	Placenta	Placenta

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