Variant report

Variant	rs13116809
Chromosome Location	chr4:97959457-97959458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11936118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121156	0.81[ASN][1000 genomes]
rs17247656	0.93[ASN][1000 genomes]
rs17247873	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2865775	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203848	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141304	0.95[ASN][1000 genomes]
rs56120140	1.00[ASN][1000 genomes]
rs61051836	0.83[ASN][1000 genomes]
rs6840021	0.95[ASN][1000 genomes]
rs6840385	0.95[ASN][1000 genomes]
rs7673377	0.81[ASN][1000 genomes]
rs981544	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97958600-97959600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:97958600-97959600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:97958600-97960000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:97958800-97959600	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr4:97959000-97959600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:97959000-97959600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:97959000-97959600	Active TSS	HepG2	liver
8	chr4:97959000-97960000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr4:97959200-97959600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:97959200-97959600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:97959200-97959800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:97959400-97959800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr4:97959400-97963800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:97959400-97965600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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