Variant report

Variant	rs13117504
Chromosome Location	chr4:110658856-110658857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10004377	0.84[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs11728699	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3181187	0.91[YRI][hapmap]
rs4698782	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5030535	0.92[YRI][hapmap]
rs6854876	0.89[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72674868	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7439493	0.96[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7674356	0.83[YRI][hapmap]
rs7694620	0.83[YRI][hapmap]
rs9992400	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs9995011	0.84[CEU][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv4463	chr4:110647731-110693125	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110651600-110662000	Weak transcription	HepG2	liver
2	chr4:110651800-110669400	Weak transcription	Spleen	Spleen
3	chr4:110652000-110662400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:110652000-110682800	Weak transcription	Left Ventricle	heart
5	chr4:110652000-110686000	Weak transcription	Ovary	ovary
6	chr4:110654800-110659200	Enhancers	Fetal Intestine Large	intestine
7	chr4:110657200-110660600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:110657800-110660800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:110658000-110659000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:110658000-110684000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:110658400-110659600	Genic enhancers	Fetal Intestine Small	intestine
12	chr4:110658800-110667800	Strong transcription	Liver	Liver
13	chr4:110658800-110669800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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