Variant report

Variant	rs13117631
Chromosome Location	chr4:186877077-186877078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2168164	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4861690	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67408926	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022661	chr4:186789827-187122464	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv537422	chr4:186789827-187122464	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1032178	chr4:186836629-186909596	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1033839	chr4:186867069-186926243	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186875200-186877200	Active TSS	Fetal Brain Female	brain
2	chr4:186875800-186877400	Active TSS	Brain Germinal Matrix	brain
3	chr4:186875800-186879000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:186876000-186877200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:186876000-186877800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:186876000-186878000	Active TSS	Brain Angular Gyrus	brain
7	chr4:186876200-186877400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
8	chr4:186876200-186877600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:186876200-186877800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:186876200-186877800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:186876200-186877800	Active TSS	Brain Anterior Caudate	brain
12	chr4:186876200-186877800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr4:186876200-186877800	Active TSS	Fetal Brain Male	brain
14	chr4:186876200-186878000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:186876400-186877200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:186876400-186877400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:186876400-186877600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr4:186876400-186877600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:186876600-186877400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:186876600-186877600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr4:186876600-186877600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
22	chr4:186876800-186877400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr4:186877000-186877200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:186877000-186877200	Enhancers	Colon Smooth Muscle	Colon
25	chr4:186877000-186877400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:186877000-186877600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr4:186877000-186877600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr4:186877000-186877600	Active TSS	Brain Hippocampus Middle	brain

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