Variant report
| Variant | rs13118791 |
|---|---|
| Chromosome Location | chr4:28150671-28150672 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:28150102..28150780-chr6:144163979..144164654,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135521 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs13106159 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73219802 | 1.00[ASN][1000 genomes] |
| rs73221805 | 1.00[ASN][1000 genomes] |
| rs73221808 | 1.00[ASN][1000 genomes] |
| rs73221810 | 1.00[ASN][1000 genomes] |
| rs73221813 | 1.00[ASN][1000 genomes] |
| rs73221814 | 1.00[ASN][1000 genomes] |
| rs73221817 | 1.00[ASN][1000 genomes] |
| rs73221823 | 1.00[ASN][1000 genomes] |
| rs73221824 | 1.00[ASN][1000 genomes] |
| rs73221827 | 1.00[ASN][1000 genomes] |
| rs73221828 | 1.00[ASN][1000 genomes] |
| rs73221829 | 1.00[ASN][1000 genomes] |
| rs73221830 | 1.00[ASN][1000 genomes] |
| rs73221837 | 1.00[ASN][1000 genomes] |
| rs73221848 | 1.00[ASN][1000 genomes] |
| rs73221850 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008691 | chr4:28051516-28193042 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005346 | chr4:28120195-28161929 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv998352 | chr4:28120195-28162959 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012692 | chr4:28122071-28165368 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1002855 | chr4:28141588-28240495 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
