Variant report

Variant	rs13118818
Chromosome Location	chr4:122050957-122050958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10446733	0.84[AMR][1000 genomes]
rs10454795	0.82[AMR][1000 genomes]
rs10518383	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945951	0.81[EUR][1000 genomes]
rs11947841	0.81[EUR][1000 genomes]
rs13102428	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13106137	0.84[AMR][1000 genomes]
rs13108739	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110041	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118913	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123960	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13124511	0.81[EUR][1000 genomes]
rs13124522	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13126929	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13129293	0.84[AMR][1000 genomes]
rs13130152	0.81[EUR][1000 genomes]
rs13133584	0.83[EUR][1000 genomes]
rs13137539	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13138203	0.86[CEU][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150702	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13152687	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1511094	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17051290	0.81[EUR][1000 genomes]
rs1858291	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2068019	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971082	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36087391	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3817171	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6534254	0.82[EUR][1000 genomes]
rs66625249	0.82[EUR][1000 genomes]
rs6814480	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6818119	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6820363	0.83[EUR][1000 genomes]
rs6821331	0.83[EUR][1000 genomes]
rs6823283	0.82[EUR][1000 genomes]
rs6828327	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6829949	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6833114	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833755	0.81[ASN][1000 genomes]
rs6835790	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6839386	0.81[EUR][1000 genomes]
rs6839726	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846458	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856825	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs867883	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs998327	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv879860	chr4:122030864-122126808	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122050600-122051600	Enhancers	Primary T cells from cord blood	blood
2	chr4:122050600-122051600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr4:122050600-122051600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:122050800-122051400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:122050800-122051600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:122050800-122051600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:122050800-122051600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr4:122050800-122051800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:122050800-122051800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr4:122050800-122052000	Enhancers	Primary T helper cells PMA-I stimulated	--

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