Variant report

Variant	rs13120409
Chromosome Location	chr4:186834988-186834989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10031442	0.86[ASN][1000 genomes]
rs11726533	0.80[ASN][1000 genomes]
rs11727354	0.83[ASN][1000 genomes]
rs13110925	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13134779	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13140248	0.83[ASN][1000 genomes]
rs1947455	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2124092	0.85[ASN][1000 genomes]
rs2310372	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34146217	0.82[ASN][1000 genomes]
rs34371287	0.82[AMR][1000 genomes]
rs34456597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4862588	0.85[ASN][1000 genomes]
rs4862593	0.83[ASN][1000 genomes]
rs4862596	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022661	chr4:186789827-187122464	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv537422	chr4:186789827-187122464	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186830800-186835000	Enhancers	Hela-S3	cervix
2	chr4:186831600-186835800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:186831600-186837600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:186832600-186836200	Enhancers	Osteobl	bone
5	chr4:186832800-186835600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:186832800-186836200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:186832800-186838200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:186833400-186835800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:186834200-186837800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:186834400-186835200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:186834400-186835200	Weak transcription	NHLF	lung
12	chr4:186834400-186835600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:186834400-186836600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:186834400-186837400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:186834400-186837600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:186834600-186835600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:186834600-186835800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:186834600-186837200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:186834800-186835200	Bivalent Enhancer	NH-A	brain
20	chr4:186834800-186836400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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