Variant report

Variant	rs13121109
Chromosome Location	chr4:148324309-148324310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13127563	1.00[ASN][1000 genomes]
rs13140736	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568137	1.00[ASN][1000 genomes]
rs17023180	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023187	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34877561	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835408	1.00[ASN][1000 genomes]
rs6537476	1.00[ASN][1000 genomes]
rs6537477	1.00[ASN][1000 genomes]
rs6537478	1.00[ASN][1000 genomes]
rs67538939	1.00[ASN][1000 genomes]
rs6817076	1.00[ASN][1000 genomes]
rs6852395	1.00[ASN][1000 genomes]
rs71616536	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673178	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148309800-148330000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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