Variant report
| Variant | rs13122602 |
|---|---|
| Chromosome Location | chr4:47358163-47358164 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs17461821 | 0.81[CEU][hapmap] |
| rs17461905 | 0.83[CEU][hapmap] |
| rs17571554 | 0.85[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs17571589 | 0.83[CEU][hapmap] |
| rs35218388 | 1.00[ASN][1000 genomes] |
| rs35451348 | 1.00[ASN][1000 genomes] |
| rs36074928 | 1.00[ASN][1000 genomes] |
| rs6826708 | 0.90[CEU][hapmap];1.00[YRI][hapmap] |
| rs7688710 | 0.84[CEU][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998919 | chr4:47207023-47476876 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
