Variant report

Variant	rs13125962
Chromosome Location	chr4:122145760-122145761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:122135869..122137614-chr4:122143872..122146704,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10004221	0.89[ASN][1000 genomes]
rs10015340	0.95[ASN][1000 genomes]
rs13104663	0.92[ASN][1000 genomes]
rs13104875	0.92[ASN][1000 genomes]
rs13112923	0.92[ASN][1000 genomes]
rs13115256	0.95[ASN][1000 genomes]
rs13116936	0.95[ASN][1000 genomes]
rs13128962	0.95[ASN][1000 genomes]
rs13129000	0.95[ASN][1000 genomes]
rs13143534	0.95[ASN][1000 genomes]
rs13151913	0.95[ASN][1000 genomes]
rs13152159	0.95[ASN][1000 genomes]
rs2136942	0.95[ASN][1000 genomes]
rs2136943	0.95[ASN][1000 genomes]
rs2198315	0.95[ASN][1000 genomes]
rs2218959	0.92[ASN][1000 genomes]
rs6812399	0.95[ASN][1000 genomes]
rs6812515	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6855628	0.86[ASN][1000 genomes]
rs71629498	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7680038	0.95[ASN][1000 genomes]
rs7684168	0.95[ASN][1000 genomes]
rs896621	0.95[ASN][1000 genomes]
rs9284633	0.95[ASN][1000 genomes]
rs9307490	0.95[ASN][1000 genomes]
rs9992960	0.95[ASN][1000 genomes]
rs9993163	0.95[ASN][1000 genomes]
rs9998339	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv879861	chr4:122126808-122181277	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122138800-122147600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:122142200-122146800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:122142200-122147200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:122143200-122146600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:122143200-122146800	Weak transcription	Fetal Lung	lung
6	chr4:122143400-122147600	Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr4:122143400-122148200	Weak transcription	Primary T cells from cord blood	blood
8	chr4:122143600-122146600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:122143600-122147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:122143600-122147800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:122143800-122146000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:122143800-122146800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:122145600-122145800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:122145600-122145800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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