Variant report

Variant	rs13126782
Chromosome Location	chr4:86851884-86851885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17410566	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13126782	HSD17B13	cis	parietal	SCAN
rs13126782	FAM13A	cis	cerebellum	SCAN

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86843200-86852400	Weak transcription	Esophagus	oesophagus
2	chr4:86844400-86853800	Weak transcription	Gastric	stomach
3	chr4:86847000-86853200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:86848600-86856000	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86849600-86852800	Enhancers	Fetal Thymus	thymus
6	chr4:86849800-86853400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:86850000-86852200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:86850000-86852200	Enhancers	Small Intestine	intestine
9	chr4:86850000-86852600	Enhancers	Fetal Muscle Leg	muscle
10	chr4:86850000-86853800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:86850400-86852200	Flanking Active TSS	Liver	Liver
12	chr4:86850400-86854400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr4:86850600-86853000	Enhancers	Left Ventricle	heart
14	chr4:86850800-86854000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:86850800-86854200	Active TSS	Fetal Kidney	kidney
16	chr4:86851000-86852000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:86851000-86852000	Enhancers	Fetal Lung	lung
18	chr4:86851000-86852600	Active TSS	Duodenum Mucosa	Duodenum
19	chr4:86851000-86853000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:86851000-86853000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:86851200-86852200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr4:86851200-86852200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:86851200-86853800	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:86851200-86863200	Weak transcription	Psoas Muscle	Psoas
25	chr4:86851400-86852200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:86851400-86852200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr4:86851400-86852200	Enhancers	Thymus	Thymus
28	chr4:86851400-86852600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr4:86851400-86852600	Weak transcription	Right Ventricle	heart
30	chr4:86851400-86852600	Enhancers	Stomach Mucosa	stomach
31	chr4:86851400-86853000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:86851400-86853200	Weak transcription	Osteobl	bone
33	chr4:86851400-86853600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr4:86851400-86853600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr4:86851400-86853600	Weak transcription	Aorta	Aorta
36	chr4:86851400-86853600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:86851400-86853600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:86851400-86853600	Enhancers	HUVEC	blood vessel
39	chr4:86851400-86853800	Weak transcription	Lung	lung
40	chr4:86851400-86854400	Weak transcription	Spleen	Spleen
41	chr4:86851400-86861600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr4:86851400-86865800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:86851400-86874600	Weak transcription	HSMMtube	muscle
44	chr4:86851600-86852000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr4:86851600-86852000	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr4:86851600-86852000	Flanking Active TSS	A549	lung
47	chr4:86851600-86852000	Enhancers	HepG2	liver
48	chr4:86851600-86852200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr4:86851600-86852400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:86851600-86852400	Enhancers	Adipose Nuclei	Adipose

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