Variant report

Variant	rs13127589
Chromosome Location	chr4:171663785-171663786
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13120872	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13132576	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17730489	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35270214	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35432171	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35735782	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35988152	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881141	chr4:171620514-171680223	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv881235	chr4:171627133-171691630	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv880422	chr4:171637914-171691630	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv881606	chr4:171640683-171760509	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv461835	chr4:171642051-171688868	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	nsv596168	chr4:171642051-171688868	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171663000-171664600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:171663200-171664200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:171663400-171663800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:171663400-171664200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:171663400-171664200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:171663600-171664600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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