Variant report

Variant	rs13127904
Chromosome Location	chr4:73835941-73835942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:73834694..73836763-chr4:73837867..73839908,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11733810	0.86[EUR][1000 genomes]
rs13102676	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13109785	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13130714	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13143720	0.86[CEU][hapmap]
rs1476223	0.84[EUR][1000 genomes]
rs17176542	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2366711	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4287976	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4694583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897524	0.86[EUR][1000 genomes]
rs55986483	0.86[EUR][1000 genomes]
rs57639620	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6414650	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6446910	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6846821	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854461	0.86[EUR][1000 genomes]
rs7660451	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7679185	0.87[EUR][1000 genomes]
rs7699591	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs997886	0.84[EUR][1000 genomes]
rs997887	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1005704	chr4:73708248-73907315	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv829971	chr4:73709753-73880451	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1013174	chr4:73785324-74031884	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv537137	chr4:73785324-74031884	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv1012068	chr4:73817769-74003079	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv1014088	chr4:73817769-74031884	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv537138	chr4:73817769-74031884	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv533502	chr4:73819067-74044813	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73834800-73836400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:73834800-73836800	Enhancers	Adipose Nuclei	Adipose
3	chr4:73834800-73837400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:73835000-73836000	Enhancers	Brain Substantia Nigra	brain
5	chr4:73835000-73836600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:73835000-73837000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:73835200-73836200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:73835200-73836200	Enhancers	Fetal Lung	lung
9	chr4:73835200-73837000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:73835200-73837600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:73835200-73837600	Enhancers	HSMMtube	muscle
12	chr4:73835200-73838200	Enhancers	HSMM	muscle
13	chr4:73835200-73842200	Enhancers	Osteobl	bone
14	chr4:73835400-73836200	Enhancers	Brain Germinal Matrix	brain
15	chr4:73835600-73836000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:73835600-73836000	Enhancers	Ovary	ovary
17	chr4:73835600-73836200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:73835600-73836200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:73835600-73836200	Enhancers	Aorta	Aorta
20	chr4:73835600-73836200	Enhancers	Fetal Muscle Leg	muscle
21	chr4:73835600-73836200	Enhancers	Fetal Stomach	stomach
22	chr4:73835600-73836400	Enhancers	Brain Anterior Caudate	brain
23	chr4:73835600-73837600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:73835600-73837800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:73835600-73838000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:73835800-73836000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:73835800-73836200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:73835800-73838000	Enhancers	NH-A	brain
29	chr4:73835800-73838200	Enhancers	HMEC	breast

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