Variant report

Variant	rs1312841
Chromosome Location	chr10:25117651-25117652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1312842	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1313659	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1314611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810760	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1811913	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1819562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830991	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2077710	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2478086	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2478089	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2478092	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4453120	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4474348	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4529797	0.85[AMR][1000 genomes]
rs4748986	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6482445	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482446	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482448	0.81[AMR][1000 genomes]
rs7900960	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9417398	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817285	chr10:25117363-25120376	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
2	esv1823501	chr10:25117363-25120376	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
3	esv1817326	chr10:25117363-25138323	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25111800-25140000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:25112200-25123400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25114600-25126400	Weak transcription	Fetal Lung	lung
4	chr10:25115400-25135600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:25115800-25126000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:25117000-25117800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:25117400-25120800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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