Variant report

Variant	rs13130335
Chromosome Location	chr4:27680708-27680709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13111409	1.00[EUR][1000 genomes]
rs13120944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13145050	1.00[EUR][1000 genomes]
rs13148481	1.00[EUR][1000 genomes]
rs34124715	1.00[EUR][1000 genomes]
rs34258956	0.91[EUR][1000 genomes]
rs35124448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71596109	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv878770	chr4:27680483-27844411	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27680600-27680800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:27680600-27681400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links