Variant report

Variant	rs13133142
Chromosome Location	chr4:86050079-86050080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13106784	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113025	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113065	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120417	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122214	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124858	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133618	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136029	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136222	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137456	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142662	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151228	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16995958	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009499	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869276	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33999142	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606166	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34609340	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34671717	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34778418	1.00[ASN][1000 genomes]
rs34835492	1.00[ASN][1000 genomes]
rs34919300	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35217626	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282096	1.00[ASN][1000 genomes]
rs35503537	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35622122	1.00[ASN][1000 genomes]
rs35623364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35733791	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35969548	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35982510	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36031693	1.00[ASN][1000 genomes]
rs36102242	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447853	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546233	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574399	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55921177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58663947	1.00[ASN][1000 genomes]
rs61443844	1.00[ASN][1000 genomes]
rs66473005	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66486319	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66923696	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67460241	1.00[ASN][1000 genomes]
rs67727084	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67860565	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811593	1.00[ASN][1000 genomes]
rs6814355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820382	1.00[ASN][1000 genomes]
rs6820757	1.00[ASN][1000 genomes]
rs6851823	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654135	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654315	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654486	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655243	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668567	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685784	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7690449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691416	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv427685	chr4:86032872-86340548	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86046800-86051000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:86048000-86051400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:86048400-86050200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:86048400-86051400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:86049000-86051600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:86049200-86050600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86049200-86050800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:86049200-86050800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:86049400-86050600	Weak transcription	Placenta	Placenta
10	chr4:86049600-86050800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:86049800-86050200	Enhancers	Duodenum Mucosa	Duodenum
12	chr4:86049800-86050400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:86050000-86050200	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr4:86050000-86050200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:86050000-86050400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:86050000-86050400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:86050000-86050400	Active TSS	HSMM	muscle
18	chr4:86050000-86050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:86050000-86051000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:86050000-86051000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:86050000-86051400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:86050000-86056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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