Variant report

Variant	rs13135562
Chromosome Location	chr4:55968745-55968746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55967012..55968825-chr4:55970373..55972276,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12639867	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55943200-55990000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:55946800-55971800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:55946800-55982800	Strong transcription	H1 Cell Line	embryonic stem cell
4	chr4:55947200-55982600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:55948000-55984800	Strong transcription	H9 Cell Line	embryonic stem cell
6	chr4:55951000-55970200	Weak transcription	Gastric	stomach
7	chr4:55953600-55973200	Weak transcription	Fetal Stomach	stomach
8	chr4:55953600-55983000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:55954000-55983000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:55954000-55989000	Weak transcription	Right Ventricle	heart
11	chr4:55954200-55982800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:55954200-55982800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:55954400-55969600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:55954400-55971400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:55954400-55982600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:55954400-55983000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:55954400-55990400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:55956400-55972400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:55956600-55969000	Weak transcription	Brain Anterior Caudate	brain
20	chr4:55956800-55973400	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:55957800-55978200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:55958800-55987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:55961000-55983200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:55961000-55990000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:55964400-55969800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:55965000-55970000	Weak transcription	Left Ventricle	heart
27	chr4:55966200-55982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:55966400-55970000	Weak transcription	Lung	lung
29	chr4:55967800-55981800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:55968200-55969800	Weak transcription	Adipose Nuclei	Adipose
31	chr4:55968200-55970000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:55968200-55975600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:55968400-55969000	Genic enhancers	HUVEC	blood vessel
34	chr4:55968400-55970600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:55968600-55970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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