Variant report

Variant	rs13136220
Chromosome Location	chr4:130019889-130019890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:130019234..130021165-chr4:130030871..130032869,2	K562	blood:
2	chr4:130011776..130014103-chr4:130019273..130020805,2	K562	blood:
3	chr4:130017343..130020226-chr4:130031173..130032927,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11733095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12508824	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13110855	0.81[CHB][hapmap]
rs13114398	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13137378	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13151322	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1867951	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs2271570	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130017600-130024600	Weak transcription	Fetal Brain Male	brain
2	chr4:130017600-130031400	Weak transcription	Pancreas	Pancrea
3	chr4:130017600-130031400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:130017600-130040400	Weak transcription	Lung	lung
5	chr4:130017800-130024200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:130017800-130026400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:130017800-130027200	Weak transcription	Small Intestine	intestine
8	chr4:130017800-130030800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:130017800-130031400	Weak transcription	Aorta	Aorta
10	chr4:130017800-130031400	Weak transcription	Left Ventricle	heart
11	chr4:130017800-130031400	Weak transcription	Ovary	ovary
12	chr4:130017800-130031400	Weak transcription	Right Ventricle	heart
13	chr4:130017800-130031600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:130017800-130032600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr4:130017800-130032800	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:130017800-130033400	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:130017800-130033400	Weak transcription	Thymus	Thymus
18	chr4:130017800-130034200	Weak transcription	Colonic Mucosa	Colon
19	chr4:130018000-130021400	Weak transcription	Right Atrium	heart
20	chr4:130018000-130023600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:130018000-130023800	Weak transcription	Liver	Liver
22	chr4:130018000-130024400	Weak transcription	Placenta	Placenta
23	chr4:130018000-130024400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:130018000-130024600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:130018000-130024600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:130018000-130024600	Weak transcription	Fetal Lung	lung
27	chr4:130018000-130024800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:130018000-130024800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:130018000-130024800	Weak transcription	Adipose Nuclei	Adipose
30	chr4:130018000-130024800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:130018000-130025400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:130018000-130026400	Weak transcription	Fetal Kidney	kidney
33	chr4:130018000-130028000	Weak transcription	NH-A	brain
34	chr4:130018000-130030200	Weak transcription	Primary T cells from cord blood	blood
35	chr4:130018000-130030400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:130018000-130030600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:130018000-130031000	Weak transcription	Fetal Thymus	thymus
38	chr4:130018000-130031400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:130018000-130031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr4:130018000-130031400	Weak transcription	Fetal Stomach	stomach
41	chr4:130018000-130032400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:130018000-130033000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:130018000-130033200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:130018000-130033400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr4:130018000-130034000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr4:130018000-130038000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr4:130018200-130024600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:130018200-130024600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:130018200-130024600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:130018200-130024600	Weak transcription	Rectal Mucosa Donor 31	rectum

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