Variant report
Variant | rs13136626 |
---|---|
Chromosome Location | chr4:611979-611980 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:611669..613220-chr4:626593..629173,2 | MCF-7 | breast: | |
2 | chr4:608593..612078-chr4:666747..670592,3 | MCF-7 | breast: | |
3 | chr4:608907..613151-chr4:666337..671528,7 | MCF-7 | breast: | |
4 | chr4:604637..608287-chr4:609936..613205,3 | K562 | blood: | |
5 | chr4:603737..606534-chr4:610162..613022,2 | MCF-7 | breast: | |
6 | chr4:610434..612539-chr4:674484..677455,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000215375 | Chromatin interaction |
ENSG00000169020 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10012461 | 0.85[EUR][1000 genomes] |
rs10015198 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10018393 | 0.85[EUR][1000 genomes] |
rs10024575 | 0.85[EUR][1000 genomes] |
rs13101691 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13103955 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13104878 | 0.87[EUR][1000 genomes] |
rs13107526 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13110755 | 0.87[EUR][1000 genomes] |
rs13111179 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13114299 | 0.87[EUR][1000 genomes] |
rs13116523 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13117283 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13118033 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs13127213 | 0.96[EUR][1000 genomes] |
rs13133935 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13139052 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13139089 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13143415 | 0.91[EUR][1000 genomes] |
rs13147797 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13150119 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28648408 | 0.85[EUR][1000 genomes] |
rs28654405 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28682363 | 0.85[EUR][1000 genomes] |
rs28687729 | 1.00[EUR][1000 genomes] |
rs28754934 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34053163 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34075612 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34094325 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34096984 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34165278 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34293668 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34363025 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34366493 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34391278 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34402770 | 1.00[EUR][1000 genomes] |
rs34421911 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34477049 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34568772 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34585712 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34587191 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs34698095 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34953355 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34992186 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35006826 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35137658 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35158410 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35207129 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35219160 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35270524 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35455427 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35535457 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35564967 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35621318 | 0.87[EUR][1000 genomes] |
rs35621580 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35649145 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35694609 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35732782 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35843044 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35853545 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35869797 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35894204 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35896648 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35925646 | 0.87[EUR][1000 genomes] |
rs35935310 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35972513 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36060793 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36117387 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61760239 | 0.87[EUR][1000 genomes] |
rs71602477 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602479 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602480 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602481 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602482 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602484 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602486 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602489 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602490 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs71602492 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71602500 | 0.87[EUR][1000 genomes] |
rs7657809 | 0.85[EUR][1000 genomes] |
rs7672426 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7674091 | 0.85[EUR][1000 genomes] |
rs7674895 | 0.85[EUR][1000 genomes] |
rs7685281 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1011715 | chr4:43860-823487 | Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 76 gene(s) | inside rSNPs | diseases |
2 | esv2830422 | chr4:72247-681939 | Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
3 | nsv532703 | chr4:72447-614414 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
4 | nsv931097 | chr4:72447-683874 | Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
5 | nsv532702 | chr4:72447-755236 | Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
6 | nsv532704 | chr4:85040-628550 | ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
7 | nsv1005224 | chr4:507005-900281 | Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
8 | nsv536976 | chr4:507005-900281 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
9 | nsv878245 | chr4:509178-694613 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
10 | nsv822425 | chr4:540105-1413799 | Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 108 gene(s) | inside rSNPs | diseases |
11 | nsv878246 | chr4:592507-696848 | Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
12 | nsv593205 | chr4:601791-623629 | Weak transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
13 | esv2757916 | chr4:603208-931354 | Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
14 | esv2759217 | chr4:603208-931354 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
15 | nsv878247 | chr4:607202-925149 | Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:610400-612600 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr4:610600-612200 | Enhancers | Placenta Amnion | Placenta Amnion |
3 | chr4:610600-612400 | Enhancers | Placenta | Placenta |
4 | chr4:611200-612000 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
5 | chr4:611200-612000 | Bivalent Enhancer | Foreskin Keratinocyte Primary Cells skin03 | Skin |
6 | chr4:611400-612400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |