Variant report

Variant	rs13137866
Chromosome Location	chr4:129124479-129124480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129117953..129120073-chr4:129123550..129125408,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10019554	0.81[ASN][1000 genomes]
rs10019840	0.82[ASN][1000 genomes]
rs13136665	0.86[ASN][1000 genomes]
rs1809796	0.87[ASN][1000 genomes]
rs1809797	0.87[ASN][1000 genomes]
rs1908450	0.86[ASN][1000 genomes]
rs1908451	0.86[ASN][1000 genomes]
rs2056470	0.85[ASN][1000 genomes]
rs6534672	0.87[ASN][1000 genomes]
rs6534673	0.87[ASN][1000 genomes]
rs6811718	0.82[ASN][1000 genomes]
rs7667562	0.87[ASN][1000 genomes]
rs7667689	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1792524	chr4:128983925-129133826	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv879929	chr4:129029653-129142079	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129094600-129131000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:129098400-129141200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:129099000-129125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:129100200-129129400	Weak transcription	HepG2	liver
5	chr4:129103600-129129800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:129103800-129131600	Weak transcription	NHLF	lung
7	chr4:129106600-129131000	Weak transcription	Colonic Mucosa	Colon
8	chr4:129108200-129149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:129108400-129136000	Weak transcription	Lung	lung
10	chr4:129108600-129129800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:129108600-129132800	Weak transcription	Fetal Brain Female	brain
12	chr4:129108600-129133600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:129110400-129134200	Weak transcription	Small Intestine	intestine
14	chr4:129112600-129133600	Weak transcription	Fetal Kidney	kidney
15	chr4:129112800-129127800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:129112800-129128000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:129113000-129124600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:129113000-129129600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:129113000-129131200	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:129113000-129141400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:129113200-129132600	Weak transcription	GM12878-XiMat	blood
22	chr4:129113200-129141400	Weak transcription	A549	lung
23	chr4:129113400-129128000	Weak transcription	Fetal Heart	heart
24	chr4:129113400-129129600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:129115800-129133200	Weak transcription	Fetal Intestine Small	intestine
26	chr4:129119200-129126600	Weak transcription	Brain Germinal Matrix	brain
27	chr4:129119200-129129800	Weak transcription	Primary B cells from cord blood	blood
28	chr4:129119200-129134800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr4:129119200-129134800	Weak transcription	Spleen	Spleen
30	chr4:129119600-129125200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:129119600-129125200	Strong transcription	Fetal Intestine Large	intestine
32	chr4:129119600-129135000	Strong transcription	Liver	Liver
33	chr4:129120000-129141800	Weak transcription	HMEC	breast
34	chr4:129120200-129133200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr4:129120400-129129200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:129120600-129126400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:129120600-129126600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr4:129120800-129130000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:129121400-129125200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:129121600-129127800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:129121600-129128200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:129122400-129127800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:129122400-129133000	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:129122400-129134000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:129122400-129134600	Weak transcription	Right Atrium	heart
46	chr4:129122600-129132200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:129122600-129133400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:129122600-129134600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:129122600-129135800	Weak transcription	Right Ventricle	heart
50	chr4:129122800-129127800	Weak transcription	Aorta	Aorta

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