Variant report

Variant	rs13139413
Chromosome Location	chr4:62206565-62206566
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13132034	0.80[EUR][1000 genomes]
rs13150558	0.84[EUR][1000 genomes]
rs34639673	0.84[EUR][1000 genomes]
rs34973110	0.80[EUR][1000 genomes]
rs35078913	0.84[EUR][1000 genomes]
rs36082269	0.84[EUR][1000 genomes]
rs66647264	0.84[EUR][1000 genomes]
rs67991398	0.84[EUR][1000 genomes]
rs72634751	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62198800-62207400	Weak transcription	Fetal Lung	lung
2	chr4:62203200-62208400	Weak transcription	Brain Substantia Nigra	brain
3	chr4:62203200-62209000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62203400-62208200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:62203400-62210000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:62203600-62209600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:62203600-62209600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:62203600-62209600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:62203600-62211800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:62204200-62209000	Weak transcription	Fetal Brain Male	brain
11	chr4:62204400-62208400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:62206000-62209800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:62206200-62208200	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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