Variant report

Variant	rs13139429
Chromosome Location	chr4:8534130-8534131
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16842480	0.80[AMR][1000 genomes]
rs16842483	0.87[AMR][1000 genomes]
rs16842486	0.87[AMR][1000 genomes]
rs16842498	0.80[AMR][1000 genomes]
rs34055610	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4247232	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4247233	0.86[AMR][1000 genomes]
rs4259044	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4358384	0.81[AMR][1000 genomes]
rs4696692	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4696693	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4696695	0.85[AMR][1000 genomes]
rs4696696	0.87[AMR][1000 genomes]
rs4696838	0.80[AMR][1000 genomes]
rs55789011	0.87[AMR][1000 genomes]
rs61258495	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287446	0.90[AMR][1000 genomes]
rs7685596	0.85[ASN][1000 genomes]
rs869600	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs869602	0.81[AMR][1000 genomes]
rs883607	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8528200-8535600	Weak transcription	Ovary	ovary
2	chr4:8532400-8535800	Weak transcription	NHDF-Ad	bronchial
3	chr4:8532600-8542800	Enhancers	Placenta	Placenta
4	chr4:8533200-8542800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:8533400-8534200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:8533600-8534200	Enhancers	HSMMtube	muscle
7	chr4:8533600-8537400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:8533800-8534400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr4:8533800-8534600	Enhancers	Pancreas	Pancrea
10	chr4:8533800-8534800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr4:8533800-8537800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:8534000-8534200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:8534000-8534200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:8534000-8534200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:8534000-8534600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:8534000-8535600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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