Variant report

Variant	rs13141110
Chromosome Location	chr4:30837846-30837847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10001740	0.80[AMR][1000 genomes]
rs1345148	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6816968	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6816969	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7656673	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
2	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30834600-30838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:30834800-30838600	Enhancers	Fetal Heart	heart
6	chr4:30835200-30838400	Weak transcription	Left Ventricle	heart
7	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:30835400-30838400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:30836400-30838600	Weak transcription	Fetal Lung	lung
10	chr4:30836600-30842400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:30837000-30838400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:30837000-30839400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:30837200-30838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:30837200-30838400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:30837200-30838400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:30837200-30838600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:30837200-30839200	Enhancers	Colon Smooth Muscle	Colon
18	chr4:30837200-30841600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:30837200-30841600	Weak transcription	Aorta	Aorta
20	chr4:30837200-30841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:30837200-30841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:30837200-30843400	Enhancers	Hela-S3	cervix
23	chr4:30837400-30838400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:30837400-30838400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:30837400-30838600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:30837400-30841200	Weak transcription	Right Ventricle	heart
27	chr4:30837600-30838800	Enhancers	HSMM	muscle
28	chr4:30837600-30839000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:30837800-30838200	Enhancers	HSMMtube	muscle
30	chr4:30837800-30839200	Enhancers	Rectal Smooth Muscle	rectum
31	chr4:30837800-30840200	Enhancers	NH-A	brain

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