Variant report

Variant	rs13143575
Chromosome Location	chr4:47064444-47064445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13112698	0.82[GIH][hapmap];0.81[MEX][hapmap]
rs34809102	0.81[AFR][1000 genomes]
rs3775536	0.82[GIH][hapmap]
rs4572848	0.93[CHB][hapmap];0.93[JPT][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7663591	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054000-47067000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:47054400-47066800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:47054600-47066800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:47063800-47071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:47064200-47065000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:47064200-47065000	Weak transcription	Osteobl	bone
8	chr4:47064200-47066800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:47064200-47073000	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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