Variant report

Variant	rs13143594
Chromosome Location	chr4:125427166-125427167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13107808	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13117687	1.00[AMR][1000 genomes]
rs13141054	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13141440	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17008239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17008257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs188739	0.96[EUR][1000 genomes]
rs312488	0.96[EUR][1000 genomes]
rs312490	0.96[EUR][1000 genomes]
rs34355070	0.92[AFR][1000 genomes]
rs34487884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34930933	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35660686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71608189	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72921166	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72921170	0.87[EUR][1000 genomes]
rs72921179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125423200-125430400	Weak transcription	Liver	Liver
2	chr4:125426200-125428800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:125426200-125429200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:125426600-125427400	Enhancers	Stomach Mucosa	stomach
5	chr4:125426800-125427800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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