Variant report

Variant	rs13143749
Chromosome Location	chr4:160611558-160611559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10000541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100248	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100250	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1119663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1304931	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476297	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1502727	0.96[ASN][1000 genomes]
rs1502729	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1502730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502738	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17038655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047794	0.96[ASN][1000 genomes]
rs2134425	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4358345	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536451	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536454	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536455	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6845876	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846319	1.00[ASN][1000 genomes]
rs7699838	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs974590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160606800-160613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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