Variant report

Variant	rs13144204
Chromosome Location	chr4:148722687-148722688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148716400..148719081-chr4:148721482..148723868,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17475681	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148710400-148729600	Weak transcription	HSMM	muscle
2	chr4:148711000-148729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:148715200-148735200	Weak transcription	Stomach Mucosa	stomach
4	chr4:148715400-148722800	Weak transcription	Fetal Heart	heart
5	chr4:148716000-148722800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:148716000-148734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:148716600-148732800	Weak transcription	Fetal Intestine Small	intestine
8	chr4:148720000-148724200	Enhancers	Colon Smooth Muscle	Colon
9	chr4:148720000-148724400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:148720400-148729200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:148720600-148729200	Weak transcription	HSMMtube	muscle
12	chr4:148720800-148722800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:148721400-148729200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:148721600-148722800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:148721600-148722800	Weak transcription	Small Intestine	intestine
16	chr4:148721600-148723000	Weak transcription	Aorta	Aorta
17	chr4:148721600-148723000	Weak transcription	Ovary	ovary
18	chr4:148721600-148729200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:148721600-148729200	Weak transcription	Adipose Nuclei	Adipose
20	chr4:148721600-148734400	Weak transcription	Fetal Stomach	stomach
21	chr4:148721600-148737200	Weak transcription	Gastric	stomach
22	chr4:148721800-148722800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:148721800-148722800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:148721800-148723000	Weak transcription	Psoas Muscle	Psoas
25	chr4:148721800-148723600	Weak transcription	Right Atrium	heart
26	chr4:148721800-148723600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:148721800-148729400	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:148721800-148729600	Weak transcription	Pancreas	Pancrea
29	chr4:148721800-148735200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:148721800-148744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:148722000-148723000	Weak transcription	Thymus	Thymus
32	chr4:148722000-148723800	Enhancers	GM12878-XiMat	blood
33	chr4:148722000-148733000	Weak transcription	Esophagus	oesophagus
34	chr4:148722200-148723000	Weak transcription	Right Ventricle	heart
35	chr4:148722200-148723200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:148722200-148723600	Weak transcription	Left Ventricle	heart
37	chr4:148722200-148729000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:148722200-148729200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:148722200-148730000	Weak transcription	Lung	lung
40	chr4:148722400-148722800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:148722400-148722800	Weak transcription	Fetal Thymus	thymus
42	chr4:148722400-148723800	Enhancers	Cortex derived primary cultured neurospheres	brain

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