Variant report

Variant	rs13145086
Chromosome Location	chr4:94954026-94954027
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11938962	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11945480	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13107950	0.86[AMR][1000 genomes]
rs13121813	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13126492	0.83[AMR][1000 genomes]
rs13143440	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1438381	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1583665	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs166796	0.96[ASN][1000 genomes]
rs17299738	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17365288	0.83[AMR][1000 genomes]
rs1821887	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs185774	0.96[ASN][1000 genomes]
rs280054	0.96[ASN][1000 genomes]
rs280055	0.96[ASN][1000 genomes]
rs280058	0.95[ASN][1000 genomes]
rs280063	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs280076	0.94[ASN][1000 genomes]
rs280078	0.94[ASN][1000 genomes]
rs34880024	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35992541	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5021131	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9684477	0.82[EUR][1000 genomes]
rs9684497	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1792557	chr4:94738158-95027272	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830010	chr4:94830239-95029403	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1002654	chr4:94867639-95030074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537187	chr4:94867639-95030074	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94953000-94958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:94953400-94954400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:94953600-94954400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:94953800-94954400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:94954000-94954400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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