Variant report

Variant	rs13145400
Chromosome Location	chr4:148023210-148023211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13145368	0.85[ASN][1000 genomes]
rs6838382	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9968288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148020800-148024600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148022600-148023400	Enhancers	Liver	Liver
3	chr4:148022600-148024200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:148022600-148024200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:148022600-148024400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:148022600-148024400	Enhancers	NHDF-Ad	bronchial
7	chr4:148022600-148024600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:148022800-148023400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:148022800-148024400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:148022800-148026400	Enhancers	NHLF	lung
11	chr4:148023000-148023600	Enhancers	NH-A	brain
12	chr4:148023000-148024400	Enhancers	HSMMtube	muscle
13	chr4:148023000-148024600	Weak transcription	Ovary	ovary
14	chr4:148023200-148024200	Weak transcription	Fetal Lung	lung
15	chr4:148023200-148024200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:148023200-148024400	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:148023200-148024600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:148023200-148024600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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