Variant report
| Variant | rs13146381 |
|---|---|
| Chromosome Location | chr4:59853842-59853843 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-IGFBP7-5 | chr4:59853822-59853873 | XLOC_003962 |
| 2 | lnc-IGFBP7-5 | chr4:59853822-59853878 | XLOC_003962 |
| 3 | lnc-IGFBP7-5 | chr4:59853822-59853873 | XLOC_003962 |
| 4 | lnc-IGFBP7-5 | chr4:59853822-59853870 | ENSG00000249382 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs13144073 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4860714 | 0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6551791 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9312120 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879031 | chr4:59434110-59915131 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | esv3446251 | chr4:59622409-59949840 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011113 | chr4:59647956-60263029 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | esv2752957 | chr4:59655302-59923634 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 5 | nsv1000048 | chr4:59709475-59889707 | ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 6 | esv3353174 | chr4:59852547-59856476 | Inactive region | TF binding regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
